VAMP
  • Introduction
  • Installation
    • Install Prequisites
    • Install VAMP
    • Non-root users
  • Usage
    • Align Contigs to Reference
    • Stitch Together Scaffold
    • Genome Annotation and Comparison
  • Commands
    • compare_genomes.py
    • fastq_to_fasta.py
    • find_contig_deletions.py
    • gff2gtf_simple.py
    • maf_net.py
    • makePairedOutput2EQUALfiles_vamp.pl
    • makePairedOutput2UNEQUALfiles_vamp.pl
    • TQSfastq_vamp.py
    • translate_cds.py
  • Modules
    • vamp.utils
    • seq_utils.convert_coordinates
    • seq_utils.fasta_from_gff
    • seq_utils.summarize_alignments
    • seq_utils.utils
 
VAMP
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